J4_6GZQ_001

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6GZQ|1|A1|U|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GZQ_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.2142

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6GZQ|1|A1|C|258
6GZQ|1|A1|U|259
*
6GZQ|1|A1|G|398
6GZQ|1|A1|A|399
6GZQ|1|A1|G|400
6GZQ|1|A1|U|401
6GZQ|1|A1|A|402
6GZQ|1|A1|C|403
*
6GZQ|1|A1|G|427
6GZQ|1|A1|G|428
6GZQ|1|A1|A|429
6GZQ|1|A1|A|430
6GZQ|1|A1|U|431
6GZQ|1|A1|C|432
6GZQ|1|A1|U|433
6GZQ|1|A1|G|434
*
6GZQ|1|A1|U|450
6GZQ|1|A1|A|451
6GZQ|1|A1|A|452
6GZQ|1|A1|G|453

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain H1

50S ribosomal protein L9

Chain W1

50S ribosomal protein L28