J4_6GZQ_008

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GZQ_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1166

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6GZQ|1|A1|G|1805
6GZQ|1|A1|A|1806
6GZQ|1|A1|C|1807
6GZQ|1|A1|U|1808
6GZQ|1|A1|G|1809
*
6GZQ|1|A1|C|1821
6GZQ|1|A1|A|1822
6GZQ|1|A1|C|1823
6GZQ|1|A1|A|1824
6GZQ|1|A1|G|1825
*
6GZQ|1|A1|C|1860
6GZQ|1|A1|G|1861
6GZQ|1|A1|A|1862
6GZQ|1|A1|C|1863
*
6GZQ|1|A1|G|1999
6GZQ|1|A1|U|2000
6GZQ|1|A1|A|2001
6GZQ|1|A1|A|2002
6GZQ|1|A1|C|2003

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2