J4_6GZQ_021

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

6GZQ|1|A1|A|2302, 6GZQ|1|A1|U|2358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GZQ_021 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.2266

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

6GZQ|1|A1|C|2299
6GZQ|1|A1|A|2300
6GZQ|1|A1|A|2301
6GZQ|1|A1|A|2302
6GZQ|1|A1|G|2303
*
6GZQ|1|A1|C|2357
6GZQ|1|A1|U|2358
6GZQ|1|A1|G|2359
6GZQ|1|A1|A|2360
6GZQ|1|A1|C|2361
*
6GZQ|1|A1|G|2384
6GZQ|1|A1|G|2385
6GZQ|1|A1|G|2386
*
6GZQ|1|A1|C|2395
6GZQ|1|A1|G|2396
6GZQ|1|A1|G|2397

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain V1

50S ribosomal protein L27

Chain b1

50S ribosomal protein L33

Chain d1

50S ribosomal protein L35