J4_6GZX_009

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6GZX_009 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.2968

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6GZX|1|A1|G|2657
6GZX|1|A1|G|2658
6GZX|1|A1|G|2659
6GZX|1|A1|C|2660
*
6GZX|1|A1|G|2688
6GZX|1|A1|A|2689
6GZX|1|A1|C|2690
*
6GZX|1|A1|G|2746
6GZX|1|A1|G|2747
6GZX|1|A1|A|2748
6GZX|1|A1|A|2749
6GZX|1|A1|G|2750
*
6GZX|1|A1|C|2784
6GZX|1|A1|G|2785
6GZX|1|A1|C|2786

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain I1

50S ribosomal protein L13

Chain J1

50S ribosomal protein L14