J4_6H4N_007

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6H4N_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0582

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6H4N|1|A|A|1772
6H4N|1|A|A|1773
6H4N|1|A|C|1774
6H4N|1|A|U|1775
6H4N|1|A|G|1776
*
6H4N|1|A|C|1788
6H4N|1|A|A|1789
6H4N|1|A|C|1790
6H4N|1|A|A|1791
6H4N|1|A|G|1792
*
6H4N|1|A|U|1827
6H4N|1|A|G|1828
6H4N|1|A|A|1829
6H4N|1|A|C|1830
*
6H4N|1|A|G|1975
6H4N|1|A|U|1976
6H4N|1|A|A|1977
6H4N|1|A|A|1978
6H4N|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA