J4_6H58_005

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6H58|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6H58_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0739

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6H58|1|A|U|1313
6H58|1|A|C|1314
*
6H58|1|A|G|1338
6H58|1|A|G|1339
6H58|1|A|U|1340
6H58|1|A|G|1341
6H58|1|A|A|1342
6H58|1|A|G|1343
*
6H58|1|A|C|1404
6H58|1|A|U|1405
*
6H58|1|A|A|1597
6H58|1|A|A|1598
6H58|1|A|U|1599
6H58|1|A|C|1600
6H58|1|A|G|1601
6H58|1|A|U|1602
6H58|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23