3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
6H58|1|a|C|183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6H58_022 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.1667
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

6H58|1|a|G|142
6H58|1|a|A|143
6H58|1|a|G|144
*
6H58|1|a|C|178
6H58|1|a|A|179
6H58|1|a|U|180
6H58|1|a|A|181
6H58|1|a|A|182
6H58|1|a|C|183
6H58|1|a|G|184
*
6H58|1|a|C|193
6H58|1|a|C|194
6H58|1|a|A|195
6H58|1|a|A|196
6H58|1|a|A|197
6H58|1|a|G|198
*
6H58|1|a|U|219
6H58|1|a|G|220
6H58|1|a|C|221

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain t
30S ribosomal protein S20

Coloring options:


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