J4_6H58_024

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6H58|1|aa|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6H58_024 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2516

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6H58|1|aa|G|115
6H58|1|aa|A|116
6H58|1|aa|G|117
6H58|1|aa|U|118
6H58|1|aa|A|119
6H58|1|aa|A|120
6H58|1|aa|U|121
6H58|1|aa|G|122
*
6H58|1|aa|U|239
6H58|1|aa|G|240
*
6H58|1|aa|C|286
6H58|1|aa|U|287
6H58|1|aa|A|288
6H58|1|aa|G|289
*
6H58|1|aa|C|311
6H58|1|aa|C|312

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain pp

30S ribosomal protein S16

Chain qq

30S ribosomal protein S17