J4_6H58_028

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GUGG*CGU*AAGAUCG*CC

Length

16 nucleotides

Bulged bases

6H58|1|ww|U|8, 6H58|1|ww|U|47, 6H58|1|ww|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6H58_028 not in the Motif Atlas

Homologous match to J4_3WQY_001

Geometric discrepancy: 0.254

The information below is about J4_3WQY_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6H58|1|ww|G|7
6H58|1|ww|U|8
6H58|1|ww|G|9
6H58|1|ww|G|10
*
6H58|1|ww|C|25
6H58|1|ww|G|26
6H58|1|ww|U|27
*
6H58|1|ww|A|43
6H58|1|ww|A|44
6H58|1|ww|G|45
6H58|1|ww|A|46
6H58|1|ww|U|47
6H58|1|ww|C|48
6H58|1|ww|G|49
*
6H58|1|ww|C|65
6H58|1|ww|C|66

Current chains

Chain ww

tRNA Mixture

Nearby chains

Chain 11

50S ribosomal protein L33

Chain gg

30S ribosomal protein S7