J4_6HA1_001

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

6HA1|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HA1_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1509

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6HA1|1|A|C|271
6HA1|1|A|C|272
*
6HA1|1|A|G|417
6HA1|1|A|A|418
6HA1|1|A|G|419
6HA1|1|A|U|420
6HA1|1|A|A|421
6HA1|1|A|C|422
*
6HA1|1|A|G|446
6HA1|1|A|G|447
6HA1|1|A|A|448
6HA1|1|A|A|449
6HA1|1|A|U|450
6HA1|1|A|C|451
6HA1|1|A|C|452
6HA1|1|A|G|453
*
6HA1|1|A|C|468
6HA1|1|A|A|469
6HA1|1|A|A|470
6HA1|1|A|G|471

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28