J4_6HA1_006

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

6HA1|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HA1_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.116

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6HA1|1|A|U|1352
6HA1|1|A|C|1353
*
6HA1|1|A|G|1377
6HA1|1|A|G|1378
6HA1|1|A|U|1379
6HA1|1|A|U|1380
6HA1|1|A|A|1381
6HA1|1|A|G|1382
*
6HA1|1|A|C|1443
6HA1|1|A|C|1444
*
6HA1|1|A|G|1642
6HA1|1|A|C|1643
6HA1|1|A|C|1644
6HA1|1|A|C|1645
6HA1|1|A|G|1646
6HA1|1|A|U|1647
6HA1|1|A|A|1648

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23