J4_6HA1_011

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HA1_011 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1797

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6HA1|1|A|G|2672
6HA1|1|A|A|2673
6HA1|1|A|G|2674
6HA1|1|A|C|2675
*
6HA1|1|A|G|2703
6HA1|1|A|A|2704
6HA1|1|A|C|2705
*
6HA1|1|A|G|2760
6HA1|1|A|G|2761
6HA1|1|A|A|2762
6HA1|1|A|C|2763
6HA1|1|A|G|2764
*
6HA1|1|A|C|2798
6HA1|1|A|C|2799
6HA1|1|A|C|2800

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14