J4_6HA1_015

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*UC*GC*GU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HA1_015 not in the Motif Atlas

Homologous match to J4_5J7L_024

Geometric discrepancy: 0.2774

The information below is about J4_5J7L_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6HA1|1|A|A|1491
6HA1|1|A|G|1492
*
6HA1|1|A|U|1513
6HA1|1|A|C|1514
*
6HA1|1|A|G|1572
6HA1|1|A|C|1573
*
6HA1|1|A|G|1594
6HA1|1|A|U|1595

Current chains

Chain A

23S ribosomal RNA

Nearby chains