J4_6HMA_001

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6HMA|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HMA_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1297

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6HMA|1|A|C|271
6HMA|1|A|C|272
*
6HMA|1|A|G|416
6HMA|1|A|A|417
6HMA|1|A|G|418
6HMA|1|A|U|419
6HMA|1|A|A|420
6HMA|1|A|C|421
*
6HMA|1|A|G|445
6HMA|1|A|G|446
6HMA|1|A|A|447
6HMA|1|A|A|448
6HMA|1|A|U|449
6HMA|1|A|C|450
6HMA|1|A|U|451
6HMA|1|A|G|452
*
6HMA|1|A|U|467
6HMA|1|A|A|468
6HMA|1|A|A|469
6HMA|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L28