J4_6HMA_002

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HMA_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0965

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6HMA|1|A|C|340
6HMA|1|A|G|341
6HMA|1|A|A|342
6HMA|1|A|A|343
6HMA|1|A|U|344
*
6HMA|1|A|A|359
6HMA|1|A|A|360
6HMA|1|A|U|361
6HMA|1|A|C|362
*
6HMA|1|A|G|366
6HMA|1|A|A|367
6HMA|1|A|A|368
*
6HMA|1|A|U|380
6HMA|1|A|G|381
6HMA|1|A|U|382
6HMA|1|A|A|383
6HMA|1|A|G|384

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L24