J4_6HMA_009

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

6HMA|1|A|A|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HMA_009 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.5682

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6HMA|1|A|G|2670
6HMA|1|A|A|2671
6HMA|1|A|G|2672
6HMA|1|A|C|2673
*
6HMA|1|A|G|2701
6HMA|1|A|A|2702
6HMA|1|A|C|2703
*
6HMA|1|A|G|2758
6HMA|1|A|G|2759
6HMA|1|A|A|2760
6HMA|1|A|C|2761
6HMA|1|A|G|2762
*
6HMA|1|A|C|2796
6HMA|1|A|C|2797
6HMA|1|A|C|2798

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain H

50S ribosomal protein L13

Chain I

50S ribosomal protein L14