J4_6HRM_001
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6HRM|1|1|U|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HRM_001 not in the Motif Atlas
- Homologous match to J4_5J7L_001
- Geometric discrepancy: 0.2271
- The information below is about J4_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6HRM|1|1|G|115
6HRM|1|1|A|116
6HRM|1|1|G|117
6HRM|1|1|U|118
6HRM|1|1|A|119
6HRM|1|1|A|120
6HRM|1|1|U|121
6HRM|1|1|G|122
*
6HRM|1|1|U|239
6HRM|1|1|G|240
*
6HRM|1|1|C|286
6HRM|1|1|U|287
6HRM|1|1|A|288
6HRM|1|1|G|289
*
6HRM|1|1|C|311
6HRM|1|1|C|312
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain u
- 30S ribosomal protein S16
- Chain v
- 30S ribosomal protein S17
Coloring options: