J4_6HRM_004
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 6HRM|1|1|U|1911
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HRM_004 not in the Motif Atlas
- Homologous match to J4_5J7L_018
- Geometric discrepancy: 0.1098
- The information below is about J4_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6HRM|1|1|C|1774
6HRM|1|1|C|1775
*
6HRM|1|1|G|1876
6HRM|1|1|A|1877
6HRM|1|1|G|1878
6HRM|1|1|U|1879
6HRM|1|1|A|1880
6HRM|1|1|G|1881
*
6HRM|1|1|U|1905
6HRM|1|1|G|1906
6HRM|1|1|A|1907
6HRM|1|1|A|1908
6HRM|1|1|U|1909
6HRM|1|1|A|1910
6HRM|1|1|U|1911
6HRM|1|1|G|1912
*
6HRM|1|1|C|1927
6HRM|1|1|A|1928
6HRM|1|1|A|1929
6HRM|1|1|G|1930
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L9
- Chain X
- 50S ribosomal protein L28
Coloring options: