J4_6HRM_007
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6HRM|1|1|G|2777, 6HRM|1|1|A|2778, 6HRM|1|1|U|2779, 6HRM|1|1|U|3153
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HRM_007 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.0772
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HRM|1|1|C|2776
6HRM|1|1|G|2777
6HRM|1|1|A|2778
6HRM|1|1|U|2779
6HRM|1|1|A|2780
6HRM|1|1|A|2781
6HRM|1|1|A|2782
*
6HRM|1|1|U|2800
6HRM|1|1|C|2801
*
6HRM|1|1|G|3151
6HRM|1|1|C|3152
6HRM|1|1|U|3153
6HRM|1|1|U|3154
*
6HRM|1|1|A|3515
6HRM|1|1|G|3516
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: