J4_6HRM_009
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 6HRM|1|1|G|2847
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HRM_009 not in the Motif Atlas
- Homologous match to J4_5J7L_023
- Geometric discrepancy: 0.0769
- The information below is about J4_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HRM|1|1|U|2819
6HRM|1|1|C|2820
*
6HRM|1|1|G|2844
6HRM|1|1|G|2845
6HRM|1|1|U|2846
6HRM|1|1|G|2847
6HRM|1|1|A|2848
6HRM|1|1|G|2849
*
6HRM|1|1|C|2910
6HRM|1|1|U|2911
*
6HRM|1|1|A|3103
6HRM|1|1|A|3104
6HRM|1|1|U|3105
6HRM|1|1|C|3106
6HRM|1|1|G|3107
6HRM|1|1|U|3108
6HRM|1|1|A|3109
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain T
- 50S ribosomal protein L23
Coloring options: