J4_6HRM_014
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HRM_014 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.0712
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6HRM|1|1|G|4149
6HRM|1|1|G|4150
6HRM|1|1|G|4151
6HRM|1|1|C|4152
*
6HRM|1|1|G|4180
6HRM|1|1|A|4181
6HRM|1|1|C|4182
*
6HRM|1|1|G|4237
6HRM|1|1|G|4238
6HRM|1|1|A|4239
6HRM|1|1|A|4240
6HRM|1|1|G|4241
*
6HRM|1|1|U|4275
6HRM|1|1|G|4276
6HRM|1|1|C|4277
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain K
- 50S ribosomal protein L14
Coloring options: