J4_6HTQ_006

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUUCC*GGGUUAG*CC*GCCCGUAC

Length

23 nucleotides

Bulged bases

6HTQ|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HTQ_006 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.4914

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6HTQ|1|A|G|1349
6HTQ|1|A|U|1350
6HTQ|1|A|U|1351
6HTQ|1|A|U|1352
6HTQ|1|A|C|1353
6HTQ|1|A|C|1354
*
6HTQ|1|A|G|1376
6HTQ|1|A|G|1377
6HTQ|1|A|G|1378
6HTQ|1|A|U|1379
6HTQ|1|A|U|1380
6HTQ|1|A|A|1381
6HTQ|1|A|G|1382
*
6HTQ|1|A|C|1443
6HTQ|1|A|C|1444
*
6HTQ|1|A|G|1642
6HTQ|1|A|C|1643
6HTQ|1|A|C|1644
6HTQ|1|A|C|1645
6HTQ|1|A|G|1646
6HTQ|1|A|U|1647
6HTQ|1|A|A|1648
6HTQ|1|A|C|1649

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain T

50S ribosomal protein L23