J4_6HTQ_016
3D structure
- PDB id
- 6HTQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCCUU*GAGU
- Length
- 20 nucleotides
- Bulged bases
- 6HTQ|1|u|U|8, 6HTQ|1|u|U|47, 6HTQ|1|u|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HTQ_016 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.4819
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6HTQ|1|u|A|7
6HTQ|1|u|U|8
6HTQ|1|u|A|9
6HTQ|1|u|G|10
*
6HTQ|1|u|C|25
6HTQ|1|u|A|26
6HTQ|1|u|G|27
*
6HTQ|1|u|C|43
6HTQ|1|u|G|44
6HTQ|1|u|U|45
6HTQ|1|u|G|46
6HTQ|1|u|U|47
6HTQ|1|u|C|48
6HTQ|1|u|C|49
6HTQ|1|u|U|50
6HTQ|1|u|U|51
*
6HTQ|1|u|G|63
6HTQ|1|u|A|64
6HTQ|1|u|G|65
6HTQ|1|u|U|66
Current chains
- Chain u
- A/R-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain x
- GTP pyrophosphokinase
Coloring options: