J4_6I7O_015

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I7O_015 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.1324

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6I7O|1|BQ|U|3010
6I7O|1|BQ|A|3011
6I7O|1|BQ|A|3012
*
6I7O|1|BQ|U|3042
6I7O|1|BQ|C|3043
*
6I7O|1|BQ|G|3098
6I7O|1|BQ|C|3099
6I7O|1|BQ|U|3100
*
6I7O|1|BQ|A|3134
6I7O|1|BQ|U|3135
6I7O|1|BQ|G|3136

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3