J4_6I7O_017

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I7O_017 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1345

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_43318.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6I7O|1|YQ|C|185
6I7O|1|YQ|U|186
6I7O|1|YQ|A|187
6I7O|1|YQ|U|188
6I7O|1|YQ|G|189
*
6I7O|1|YQ|C|205
6I7O|1|YQ|G|206
6I7O|1|YQ|U|207
6I7O|1|YQ|C|208
*
6I7O|1|YQ|G|212
6I7O|1|YQ|A|213
6I7O|1|YQ|G|214
*
6I7O|1|YQ|C|226
6I7O|1|YQ|G|227
6I7O|1|YQ|U|228
6I7O|1|YQ|G|229
6I7O|1|YQ|U|230
6I7O|1|YQ|G|231

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XK

60S ribosomal protein L26-A

Chain YE

60S ribosomal protein L4-A

Chain YS

5.8S ribosomal RNA; 5.8S rRNA