J4_6I7O_022
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6I7O_022 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0828
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6I7O|1|YQ|G|2130
6I7O|1|YQ|A|2131
6I7O|1|YQ|C|2132
6I7O|1|YQ|U|2133
6I7O|1|YQ|G|2134
*
6I7O|1|YQ|C|2146
6I7O|1|YQ|A|2147
6I7O|1|YQ|U|2148
6I7O|1|YQ|A|2149
6I7O|1|YQ|G|2150
*
6I7O|1|YQ|U|2186
6I7O|1|YQ|G|2187
6I7O|1|YQ|A|2188
6I7O|1|YQ|U|2189
6I7O|1|YQ|U|2190
*
6I7O|1|YQ|A|2317
6I7O|1|YQ|U|2318
6I7O|1|YQ|U|2319
6I7O|1|YQ|A|2320
6I7O|1|YQ|A|2321
6I7O|1|YQ|C|2322
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain 2b
- Small subunit ribosomal RNA; SSU rRNA
- Chain XS
- 60S ribosomal protein L41-B
- Chain XT
- 60S ribosomal protein L43-A
- Chain XW
- 60S ribosomal protein L2-A
Coloring options: