J4_6IP8_007
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6IP8_007 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1646
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6IP8|1|1A|G|3634
6IP8|1|1A|A|3635
6IP8|1|1A|C|3636
6IP8|1|1A|U|3637
6IP8|1|1A|G|3638
*
6IP8|1|1A|C|3650
6IP8|1|1A|A|3651
6IP8|1|1A|A|3652
6IP8|1|1A|A|3653
6IP8|1|1A|G|3654
*
6IP8|1|1A|U|3690
6IP8|1|1A|G|3691
6IP8|1|1A|A|3692
6IP8|1|1A|U|3693
6IP8|1|1A|U|3694
*
6IP8|1|1A|A|3821
6IP8|1|1A|U|3822
6IP8|1|1A|G|3823
6IP8|1|1A|A|3824
6IP8|1|1A|A|3825
6IP8|1|1A|C|3826
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2h
- 60S ribosomal protein L41
- Chain 2j
- 60S ribosomal protein L37a
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
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