J4_6LKQ_004

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6LKQ|1|t|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6LKQ_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1177

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6LKQ|1|t|C|268
6LKQ|1|t|C|269
*
6LKQ|1|t|G|370
6LKQ|1|t|A|371
6LKQ|1|t|G|372
6LKQ|1|t|U|373
6LKQ|1|t|A|374
6LKQ|1|t|G|375
*
6LKQ|1|t|U|399
6LKQ|1|t|G|400
6LKQ|1|t|A|401
6LKQ|1|t|A|402
6LKQ|1|t|U|403
6LKQ|1|t|A|404
6LKQ|1|t|U|405
6LKQ|1|t|G|406
*
6LKQ|1|t|C|421
6LKQ|1|t|A|422
6LKQ|1|t|A|423
6LKQ|1|t|G|424

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L28