3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GG*UU*AC*GC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6LKQ_010 not in the Motif Atlas
Homologous match to J4_5J7L_024
Geometric discrepancy: 0.1114
The information below is about J4_5J7L_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_24280.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6LKQ|1|t|G|1444
6LKQ|1|t|G|1445
*
6LKQ|1|t|U|1466
6LKQ|1|t|U|1467
*
6LKQ|1|t|A|1525
6LKQ|1|t|C|1526
*
6LKQ|1|t|G|1546
6LKQ|1|t|C|1547

Current chains

Chain t
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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