J4_6LKQ_015
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 6LKQ|1|s|A|182, 6LKQ|1|s|C|183, 6LKQ|1|s|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6LKQ_015 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.2147
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6LKQ|1|s|G|142
6LKQ|1|s|A|143
6LKQ|1|s|G|144
*
6LKQ|1|s|C|178
6LKQ|1|s|A|179
6LKQ|1|s|U|180
6LKQ|1|s|A|181
6LKQ|1|s|A|182
6LKQ|1|s|C|183
6LKQ|1|s|G|184
*
6LKQ|1|s|C|193
6LKQ|1|s|C|194
6LKQ|1|s|A|195
6LKQ|1|s|A|196
6LKQ|1|s|A|197
6LKQ|1|s|G|198
*
6LKQ|1|s|U|219
6LKQ|1|s|G|220
6LKQ|1|s|C|221
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain S
- 30S ribosomal protein S20
Coloring options: