J4_6LSR_005
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6LSR|1|2|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6LSR_005 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0865
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LSR|1|2|G|2406
6LSR|1|2|G|2407
6LSR|1|2|U|2408
6LSR|1|2|U|2409
6LSR|1|2|C|2410
*
6LSR|1|2|G|2434
6LSR|1|2|G|2435
6LSR|1|2|U|2436
6LSR|1|2|C|2437
6LSR|1|2|A|2438
6LSR|1|2|G|2439
*
6LSR|1|2|U|2538
6LSR|1|2|C|2539
*
6LSR|1|2|G|2777
6LSR|1|2|G|2778
6LSR|1|2|C|2779
6LSR|1|2|C|2780
6LSR|1|2|G|2781
6LSR|1|2|U|2782
6LSR|1|2|A|2783
6LSR|1|2|C|2784
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L34
- Chain H
- 60S ribosomal protein L35
- Chain M
- 60S ribosomal protein L37
- Chain O
- 60S ribosomal protein L38
- Chain P
- 60S ribosomal protein L39
- Chain a
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L23a
- Chain z
- Proliferation-associated protein 2G4
Coloring options: