J4_6LSS_009

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUAAG*UUGA(PSU)*ACC*GGG

Length

16 nucleotides

Bulged bases

6LSS|1|2|A|4234

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6LSS_009 not in the Motif Atlas

Homologous match to J4_8P9A_019

Geometric discrepancy: 0.2115

The information below is about J4_8P9A_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.1

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F

Number of instances in this motif group

3

Unit IDs

6LSS|1|2|C|4231
6LSS|1|2|U|4232
6LSS|1|2|A|4233
6LSS|1|2|A|4234
6LSS|1|2|G|4235
*
6LSS|1|2|U|4289
6LSS|1|2|U|4290
6LSS|1|2|G|4291
6LSS|1|2|A|4292
6LSS|1|2|PSU|4293
*
6LSS|1|2|A|4317
6LSS|1|2|C|4318
6LSS|1|2|C|4319
*
6LSS|1|2|G|4328
6LSS|1|2|G|4329
6LSS|1|2|G|4330

Current chains

Chain 2

28S rRNA

Nearby chains

Chain W

60S ribosomal protein L36a

Chain c

60S ribosomal protein L21

Chain r

60S ribosomal protein L5