J4_6MPI_003

3D structure

PDB id

6MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6MPI_003 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.052

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6MPI|1|A|G|142
6MPI|1|A|A|143
6MPI|1|A|G|144
*
6MPI|1|A|C|178
6MPI|1|A|A|179
6MPI|1|A|U|180
6MPI|1|A|G|181
6MPI|1|A|U|182
6MPI|1|A|G|183
*
6MPI|1|A|C|194
6MPI|1|A|A|195
6MPI|1|A|A|196
6MPI|1|A|A|197
6MPI|1|A|G|198
*
6MPI|1|A|C|219
6MPI|1|A|G|220
6MPI|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20