3D structure

PDB id
6MTE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUAAG*UUGA(PSU)*ACC*GGG
Length
16 nucleotides
Bulged bases
6MTE|1|5|A|4234
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6MTE_009 not in the Motif Atlas
Homologous match to J4_8P9A_019
Geometric discrepancy: 0.2205
The information below is about J4_8P9A_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

6MTE|1|5|C|4231
6MTE|1|5|U|4232
6MTE|1|5|A|4233
6MTE|1|5|A|4234
6MTE|1|5|G|4235
*
6MTE|1|5|U|4289
6MTE|1|5|U|4290
6MTE|1|5|G|4291
6MTE|1|5|A|4292
6MTE|1|5|PSU|4293
*
6MTE|1|5|A|4317
6MTE|1|5|C|4318
6MTE|1|5|C|4319
*
6MTE|1|5|G|4328
6MTE|1|5|G|4329
6MTE|1|5|G|4330

Current chains

Chain 5
28S rRNA

Nearby chains

Chain D
uL18
Chain T
eL21
Chain b
eL29
Chain o
eL42

Coloring options:


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