J4_6MTE_009
3D structure
- PDB id
- 6MTE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 6MTE|1|5|A|4234
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6MTE_009 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.2205
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6MTE|1|5|C|4231
6MTE|1|5|U|4232
6MTE|1|5|A|4233
6MTE|1|5|A|4234
6MTE|1|5|G|4235
*
6MTE|1|5|U|4289
6MTE|1|5|U|4290
6MTE|1|5|G|4291
6MTE|1|5|A|4292
6MTE|1|5|PSU|4293
*
6MTE|1|5|A|4317
6MTE|1|5|C|4318
6MTE|1|5|C|4319
*
6MTE|1|5|G|4328
6MTE|1|5|G|4329
6MTE|1|5|G|4330
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- uL18
- Chain T
- eL21
- Chain b
- eL29
- Chain o
- eL42
Coloring options: