J4_6N1D_004

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6N1D|1|A23S|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N1D_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1963

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6N1D|1|A23S|C|268
6N1D|1|A23S|U|269
*
6N1D|1|A23S|G|370
6N1D|1|A23S|A|371
6N1D|1|A23S|G|372
6N1D|1|A23S|U|373
6N1D|1|A23S|A|374
6N1D|1|A23S|C|375
*
6N1D|1|A23S|G|399
6N1D|1|A23S|G|400
6N1D|1|A23S|A|401
6N1D|1|A23S|A|402
6N1D|1|A23S|U|403
6N1D|1|A23S|C|404
6N1D|1|A23S|U|405
6N1D|1|A23S|G|406
*
6N1D|1|A23S|U|421
6N1D|1|A23S|A|422
6N1D|1|A23S|A|423
6N1D|1|A23S|G|424

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL09

50S ribosomal protein L9

Chain AL28

50S ribosomal protein L28