J4_6N1D_016

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6N1D|1|B16S|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N1D_016 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1407

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6N1D|1|B16S|G|115
6N1D|1|B16S|A|116
6N1D|1|B16S|G|117
6N1D|1|B16S|U|118
6N1D|1|B16S|A|119
6N1D|1|B16S|A|120
6N1D|1|B16S|C|121
6N1D|1|B16S|G|122
*
6N1D|1|B16S|U|239
6N1D|1|B16S|C|240
*
6N1D|1|B16S|G|286
6N1D|1|B16S|U|287
6N1D|1|B16S|A|288
6N1D|1|B16S|G|289
*
6N1D|1|B16S|C|311
6N1D|1|B16S|C|312

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS16

30S ribosomal protein S16

Chain BS17

30S ribosomal protein S17