J4_6N1D_018
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6N1D|1|B16S|G|576, 6N1D|1|B16S|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6N1D_018 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0933
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6N1D|1|B16S|G|575
6N1D|1|B16S|G|576
6N1D|1|B16S|G|577
*
6N1D|1|B16S|C|764
6N1D|1|B16S|G|765
6N1D|1|B16S|A|766
6N1D|1|B16S|A|767
6N1D|1|B16S|A|768
6N1D|1|B16S|G|769
*
6N1D|1|B16S|C|810
6N1D|1|B16S|C|811
6N1D|1|B16S|C|812
6N1D|1|B16S|U|813
6N1D|1|B16S|A|814
6N1D|1|B16S|A|815
6N1D|1|B16S|A|816
6N1D|1|B16S|C|817
6N1D|1|B16S|G|818
6N1D|1|B16S|A|819
6N1D|1|B16S|U|820
6N1D|1|B16S|G|821
*
6N1D|1|B16S|C|879
6N1D|1|B16S|C|880
Current chains
- Chain B16S
- 16S rRNA
Nearby chains
- Chain B23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain BS08
- 30S ribosomal protein S8
- Chain BS12
- 30S ribosomal protein S12
- Chain BS15
- 30S ribosomal protein S15
- Chain BS17
- 30S ribosomal protein S17
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