J4_6N1D_020

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N1D_020 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1542

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6N1D|1|B23S|C|297
6N1D|1|B23S|G|298
6N1D|1|B23S|A|299
6N1D|1|B23S|A|300
6N1D|1|B23S|G|301
*
6N1D|1|B23S|C|316
6N1D|1|B23S|G|317
6N1D|1|B23S|C|318
6N1D|1|B23S|C|319
*
6N1D|1|B23S|G|323
6N1D|1|B23S|A|324
6N1D|1|B23S|G|325
*
6N1D|1|B23S|C|337
6N1D|1|B23S|G|338
6N1D|1|B23S|U|339
6N1D|1|B23S|A|340
6N1D|1|B23S|G|341

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL04

50S ribosomal protein L4

Chain BL24

50S ribosomal protein L24