J4_6N1D_030

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

U(4SU)AG*CAC*GGG(G7M)UCG*CA

Length

16 nucleotides

Bulged bases

6N1D|1|BPTN|4SU|8, 6N1D|1|BPTN|U|47, 6N1D|1|BPTN|C|48

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N1D_030 not in the Motif Atlas

Homologous match to J4_3WQY_001

Geometric discrepancy: 0.2359

The information below is about J4_3WQY_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6N1D|1|BPTN|U|7
6N1D|1|BPTN|4SU|8
6N1D|1|BPTN|A|9
6N1D|1|BPTN|G|10
*
6N1D|1|BPTN|C|25
6N1D|1|BPTN|A|26
6N1D|1|BPTN|C|27
*
6N1D|1|BPTN|G|43
6N1D|1|BPTN|G|44
6N1D|1|BPTN|G|45
6N1D|1|BPTN|G7M|46
6N1D|1|BPTN|U|47
6N1D|1|BPTN|C|48
6N1D|1|BPTN|G|49
*
6N1D|1|BPTN|C|65
6N1D|1|BPTN|A|66

Current chains

Chain BPTN

P-tRNA

Nearby chains

Chain B16S

Small subunit ribosomal RNA; SSU rRNA

Chain BATN

Transfer RNA; tRNA

Chain BL33

50S ribosomal protein L33

Chain BS13

30S ribosomal protein S13