3D structure

PDB id
6N8J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUAUG*CGUC*GAG*CGUGUG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6N8J_002 not in the Motif Atlas
Homologous match to J4_8P9A_013
Geometric discrepancy: 0.1365
The information below is about J4_8P9A_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_12410.1
Basepair signature
cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6N8J|1|1|C|185
6N8J|1|1|U|186
6N8J|1|1|A|187
6N8J|1|1|U|188
6N8J|1|1|G|189
*
6N8J|1|1|C|205
6N8J|1|1|G|206
6N8J|1|1|U|207
6N8J|1|1|C|208
*
6N8J|1|1|G|212
6N8J|1|1|A|213
6N8J|1|1|G|214
*
6N8J|1|1|C|226
6N8J|1|1|G|227
6N8J|1|1|U|228
6N8J|1|1|G|229
6N8J|1|1|U|230
6N8J|1|1|G|231

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 3
5.8S ribosomal RNA; 5.8S rRNA
Chain C
60S ribosomal protein L4-A
Chain Y
60S ribosomal protein L26-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3043 s