J4_6N8J_006
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6N8J_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1102
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6N8J|1|1|G|2130
6N8J|1|1|A|2131
6N8J|1|1|C|2132
6N8J|1|1|U|2133
6N8J|1|1|G|2134
*
6N8J|1|1|C|2146
6N8J|1|1|A|2147
6N8J|1|1|U|2148
6N8J|1|1|A|2149
6N8J|1|1|G|2150
*
6N8J|1|1|U|2186
6N8J|1|1|G|2187
6N8J|1|1|A|2188
6N8J|1|1|U|2189
6N8J|1|1|U|2190
*
6N8J|1|1|A|2317
6N8J|1|1|U|2318
6N8J|1|1|U|2319
6N8J|1|1|A|2320
6N8J|1|1|A|2321
6N8J|1|1|C|2322
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain p
- 60S ribosomal protein L43-A
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