J4_6N8J_010

3D structure

PDB id

6N8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GUG

Length

16 nucleotides

Bulged bases

6N8J|1|1|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N8J_010 not in the Motif Atlas

Homologous match to J4_8CRE_008

Geometric discrepancy: 0.1362

The information below is about J4_8CRE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

6N8J|1|1|C|2654
6N8J|1|1|U|2655
6N8J|1|1|A|2656
6N8J|1|1|A|2657
6N8J|1|1|G|2658
*
6N8J|1|1|U|2712
6N8J|1|1|U|2713
6N8J|1|1|G|2714
6N8J|1|1|A|2715
6N8J|1|1|U|2716
*
6N8J|1|1|A|2740
6N8J|1|1|C|2741
6N8J|1|1|C|2742
*
6N8J|1|1|G|2751
6N8J|1|1|U|2752
6N8J|1|1|G|2753

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain o

60S ribosomal protein L29

Chain q

60S ribosomal protein L42-A