3D structure

PDB id
6N8O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UAA*UC*GCU*AUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6N8O|1|A|U|3010
6N8O|1|A|A|3011
6N8O|1|A|A|3012
*
6N8O|1|A|U|3042
6N8O|1|A|C|3043
*
6N8O|1|A|G|3098
6N8O|1|A|C|3099
6N8O|1|A|U|3100
*
6N8O|1|A|A|3134
6N8O|1|A|U|3135
6N8O|1|A|G|3136

Current chains

Chain A
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain E
60S ribosomal protein L3
Chain b
60S ribosomal protein L16-A
Chain i
60S ribosomal protein L23-A

Coloring options:

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