J4_6N9E_007

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N9E_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6N9E|1|1A|G|1803
6N9E|1|1A|A|1804
6N9E|1|1A|C|1805
6N9E|1|1A|U|1806
6N9E|1|1A|G|1807
*
6N9E|1|1A|C|1819
6N9E|1|1A|A|1820
6N9E|1|1A|C|1821
6N9E|1|1A|A|1822
6N9E|1|1A|G|1823
*
6N9E|1|1A|C|1858
6N9E|1|1A|G|1859
6N9E|1|1A|A|1860
6N9E|1|1A|C|1861
*
6N9E|1|1A|G|1997
6N9E|1|1A|U|1998
6N9E|1|1A|A|1999
6N9E|1|1A|A|2000
6N9E|1|1A|C|2001

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S Ribosomal Protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA