J4_6N9F_026

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6N9F|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N9F_026 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.107

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6N9F|1|2a|G|142
6N9F|1|2a|A|143
6N9F|1|2a|G|144
*
6N9F|1|2a|C|178
6N9F|1|2a|A|179
6N9F|1|2a|U|180
6N9F|1|2a|G|181
6N9F|1|2a|U|182
6N9F|1|2a|G|183
*
6N9F|1|2a|C|194
6N9F|1|2a|A|195
6N9F|1|2a|A|196
6N9F|1|2a|A|197
6N9F|1|2a|G|198
*
6N9F|1|2a|C|219
6N9F|1|2a|G|220
6N9F|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S Ribosomal Protein S20