J4_6ND6_020

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

6ND6|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ND6_020 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.088

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6ND6|1|2A|U|1313
6ND6|1|2A|C|1314
*
6ND6|1|2A|G|1338
6ND6|1|2A|G|1339
6ND6|1|2A|U|1340
6ND6|1|2A|U|1341
6ND6|1|2A|A|1342
6ND6|1|2A|G|1343
*
6ND6|1|2A|C|1404
6ND6|1|2A|U|1405
*
6ND6|1|2A|A|1597
6ND6|1|2A|C|1598
6ND6|1|2A|C|1599
6ND6|1|2A|C|1600
6ND6|1|2A|G|1601
6ND6|1|2A|U|1602
6ND6|1|2A|A|1603

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23