J4_6ND6_027

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ND6_027 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1281

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6ND6|1|2a|G|142
6ND6|1|2a|A|143
6ND6|1|2a|G|144
*
6ND6|1|2a|C|178
6ND6|1|2a|A|179
6ND6|1|2a|U|180
6ND6|1|2a|G|181
6ND6|1|2a|U|182
6ND6|1|2a|G|183
*
6ND6|1|2a|C|194
6ND6|1|2a|A|195
6ND6|1|2a|A|196
6ND6|1|2a|A|197
6ND6|1|2a|G|198
*
6ND6|1|2a|C|219
6ND6|1|2a|G|220
6ND6|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20