J4_6NDK_002

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6NDK|1|QA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NDK_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1432

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6NDK|1|QA|G|142
6NDK|1|QA|A|143
6NDK|1|QA|G|144
*
6NDK|1|QA|C|178
6NDK|1|QA|A|179
6NDK|1|QA|U|180
6NDK|1|QA|G|181
6NDK|1|QA|U|182
6NDK|1|QA|G|183
*
6NDK|1|QA|C|194
6NDK|1|QA|A|195
6NDK|1|QA|A|196
6NDK|1|QA|A|197
6NDK|1|QA|G|198
*
6NDK|1|QA|C|219
6NDK|1|QA|G|220
6NDK|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20