J4_6NDK_011

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NDK_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0916

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6NDK|1|RA|G|1772
6NDK|1|RA|A|1773
6NDK|1|RA|C|1774
6NDK|1|RA|U|1775
6NDK|1|RA|G|1776
*
6NDK|1|RA|C|1788
6NDK|1|RA|A|1789
6NDK|1|RA|C|1790
6NDK|1|RA|A|1791
6NDK|1|RA|G|1792
*
6NDK|1|RA|C|1827
6NDK|1|RA|G|1828
6NDK|1|RA|A|1829
6NDK|1|RA|C|1830
*
6NDK|1|RA|G|1975
6NDK|1|RA|U|1976
6NDK|1|RA|A|1977
6NDK|1|RA|A|1978
6NDK|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2