J4_6NSH_002

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6NSH|1|QA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6NSH_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1394

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6NSH|1|QA|G|142
6NSH|1|QA|A|143
6NSH|1|QA|G|144
*
6NSH|1|QA|C|178
6NSH|1|QA|A|179
6NSH|1|QA|U|180
6NSH|1|QA|G|181
6NSH|1|QA|U|182
6NSH|1|QA|G|183
*
6NSH|1|QA|C|194
6NSH|1|QA|A|195
6NSH|1|QA|A|196
6NSH|1|QA|A|197
6NSH|1|QA|G|198
*
6NSH|1|QA|C|219
6NSH|1|QA|G|220
6NSH|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20